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Module Generation Description
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Create Analysis
Analysis Name:
*
(no underscores or periods)
Use Preloaded Data
Upload Data
Microarray Data:
*
Select a sample set
GSE43684_family
GSE10946_family
The transcriptome of human oocytes - GSE12034
Gene expression microarray profiles of cumulus cells in lean and overweight-obese polycystic ovary syndrome patients-GSE10946 - All groups-nonPCOS_Lean
Expression data from cumulus cells that surround oocytes resulting in early or late cleaving embryos-GSE9526
Microarray analysis on NL and PCOS oocytes-GSE5850
Human cumulus cells-GSE31681
Differentiating factors of cumulus cells related to quality of the human oocyte - GSE37277
Differentiating factors of cumulus cells related to quality of the human oocyte [CadoretPart1]-GSE37110
Differentiating factors of cumulus cells related to quality of the human oocyte [CadoretPart3]-GSE37116
Differentiating factors of cumulus cells related to quality of the human oocyte [CadoretPart2]-GSE37117
Modified natural and stimulated in vitro ferlitization cycle: Cumulus cells-GSE43684
Differential Gene Expression in Granulose Cells from Polycystic Ovary Syndrome Patients with and without Insulin Resistance: Identification of Susceptibility Gene Sets through Network Analysis - GSE34526
Gene expression microarray profiles of cumulus cells in lean and overweight-obese polycystic ovary syndrome patients-GSE10946
Expression data from human cumulus cells isolated from oocytes at MI and MII staged in polycystic ovary syndrome (PCOS) patients-GSE40400
Select Group:
*
Select Sample Group:
*
(you can also use the
Annotation Tool
to create a new one )
For a simplified uploading process,
Module Analysis Wizard
will take you through the uploading of data into the Module Analysis Tool step-by-step, and notify you when your analyses are finished.
Microarray Data:
*
Design File:
*
Change default parameters
fields marked with * are required
Preprocessing
Data
Statistical
Perform Quantile Normalization
TRUE
FALSE
Perform Flooring
TRUE
FALSE
Min Expression
Perform Log2
TRUE
FALSE
Perform PALO
TRUE
FALSE
PALX percent
Range Cut
Chip Selection:
Affymetrix: HG-U133A
Affymetrix: HG-U133B
Affymetrix: HG-U133_Plus_2
Illumina: Illumina Hu6 V2
Illumina: Hu6 V2 (Norm.)
Illumina: Hu6 V3
Illumina: Hu V3 Ref 8
Illumina: HT12 V3
Illumina: Hu6 v3 HT12
Illumina: Hu6 V3 (GEO - Raw)
Illumina: HT12 V4
Illumina: Hu8 V2
Illumina: Sentrix Hu-6 v2
Ensembl: RnaSeq1 Hu Ens Gene
Affymetrix: HG 1.0 ST (transcript)
ABI: ABI Human v2
Agilent: Agilent-014850 (feature)
Agilent: Agilent-014850 (probe)
Affymetrix: PrimeView
Affymetrix: Rhesus Macaque
Module Generation:
2
3
Signal pattern:
input type:
BeadStudio
Custom
Metric
zscore
fold
Metric threshold
Intensity Difference Threshold
Measure of center
mean
median
Multiple Testing Correction
TRUE
FALSE
False Discovery Rate
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1.70.7-stable-gxb1-release