Sample Set Annotation Tool: Differential Gene Expression in Granulose Cells from Polycystic Ovary Syndrome Patients with and without Insulin Resistance: Identification of Susceptibility Gene Sets through Network Analysis

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

Polycystic ovary Syndrome (PCOS) is a heterogeneous endocrine disorder that shows evidence of genetic predidposition among affected individuals. We have utilized the Microarray data from granulosa cells of normal and PCOS women for network construction.

Hypothesis

Experimental Design

Human granulosa cells were isolated from ovarian aspirates from normal and PCOS women undergoing IVF and for each sample, RNA was extracted and hybridized to an Affymetrix GeneChip.

Experimental Variables

Granulosa Cells

Controls

Methods

Additional Information

Expected Samples:

10 Samples Loaded: 10

Species

Human (Homo sapiens)

Sample Source

Granulose cells

Disease

Polycystic ovary syndrome

Treatment Protocol

Growth Protocol

Extraction Protocol

Storage Conditions

Sample Set Spreadsheet

Please log in in order to upload files.

Samples Preview

Sample ID	!Sample Title	group	Cell type	disease
GSM850527	Normal, biological rep 1	normal	granulosa cells	normal
GSM850528	Normal, biological rep 2	normal	granulosa cells	normal
GSM850529	Normal, biological rep 3	normal	granulosa cells	normal
GSM850530	PCOS, biological rep 1	PCOS	granulosa cells	Polycystic ovary Syndrome
GSM850531	PCOS, biological rep 2	PCOS	granulosa cells	Polycystic ovary Syndrome

Please log in in order to upload files.

File
sampleset4000028_sampleannotations-modified.csv Sample Set Spreadsheet
sampleset4000028_sampleannotations-modified.csv Sample Set Spreadsheet

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID	!Sample Title	Group	Cell type	Disease
GSM850527	Normal, biological rep 1	normal	granulosa cells	normal
GSM850528	Normal, biological rep 2	normal	granulosa cells	normal
GSM850529	Normal, biological rep 3	normal	granulosa cells	normal
GSM850530	PCOS, biological rep 1	PCOS	granulosa cells	Polycystic ovary Syndrome
GSM850531	PCOS, biological rep 2	PCOS	granulosa cells	Polycystic ovary Syndrome
GSM850532	PCOS, biological rep 3	PCOS	granulosa cells	Polycystic ovary Syndrome
GSM850533	PCOS, biological rep 4	PCOS	granulosa cells	Polycystic ovary Syndrome
GSM850534	PCOS, biological rep 5	PCOS	granulosa cells	Polycystic ovary Syndrome
GSM850535	PCOS, biological rep 6	PCOS	granulosa cells	Polycystic ovary Syndrome
GSM850536	PCOS, biological rep 7	PCOS	granulosa cells	Polycystic ovary Syndrome

Group Sets View in Gene Expression Browser

Name
All Samples	Default	View
In order to make new Group Sets or change settings, please log in.

Module Analysis

Group Set
All Samples

SIDRA