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Clinical

GSE37277

Purpose

Single embryo transfer (SET) is the most successful way to reduce the frequency of multiple pregnancies during in vitro fertilisation. However, selecting the embryo with the highest chances of pregnancy for SET remains a difficult challenge, since morphological and kinetics criteria provide poor prediction of both developmental and implantation ability. Partly through the expression of specific genes, the oocyte-cumulus interaction helps the oocyte to acquire its developmental competence. Our aim was therefore to identify at the level of cumulus cells (CCs) any genes related to oocyte developmental competence.

Hypothesis

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Experimental Design

individual Cumulus Cells (CCs) were collected from patients undergoing an intra-cytoplasmic sperm injection procedure. Gene expression of CCs was studied using microarray according to the nuclear maturity of the oocyte (immature vs. mature oocyte) and to the developmental competence of the oocyte (ability to reach the blastocyst stage after fertilisation).

Experimental Variables

Cumulus cells from the following stages: Blastocyst, immature oocytes and poor quality embryos

Controls

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Methods

Microarray

Additional Information

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Microarray
Agilent 014850 v1
92 Samples Loaded: 92
Human (Homo sapiens)
cumulus cells
Sample Set Spreadsheet
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Samples Preview
Sample ID !Sample Title group Cell type Oocyte developmental competence
GSM910918 blastocyst [B12_1] blastocyst Cumulus cells B
GSM910919 blastocyst [B12_2] blastocyst Cumulus cells B
GSM910920 embryo of poor quality [E38_3] embryo of poor quality Cumulus cells E
GSM910921 embryo of poor quality [E15_4] embryo of poor quality Cumulus cells E
GSM910922 immature oocytes [VG8_5] immature oocytes Cumulus cells VG
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File
sampleset4000034_sampleannotations-modified.csv
Sample Set Spreadsheet
sampleset4000034_sampleannotations-modified.csv
Sample Set Spreadsheet
Raw Signal
Raw Signal
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Sample ID !Sample Title Group Cell type Oocyte developmental competence
GSM910918
blastocyst [B12_1]
blastocyst
Cumulus cells
B
GSM910919
blastocyst [B12_2]
blastocyst
Cumulus cells
B
GSM910920
embryo of poor quality [E38_3]
embryo of poor quality
Cumulus cells
E
GSM910921
embryo of poor quality [E15_4]
embryo of poor quality
Cumulus cells
E
GSM910922
immature oocytes [VG8_5]
immature oocytes
Cumulus cells
VG
GSM910923
immature oocytes [VG10_6]
immature oocytes
Cumulus cells
VG
GSM910924
blastocyst [B4_7]
blastocyst
Cumulus cells
B
GSM910925
blastocyst [B2_8]
blastocyst
Cumulus cells
B
GSM910926
immature oocytes [VG19_9]
immature oocytes
Cumulus cells
VG
GSM910927
immature oocytes [VG16_10]
immature oocytes
Cumulus cells
VG
GSM910928
blastocyst [B7_11]
blastocyst
Cumulus cells
B
GSM910929
blastocyst [B10_12]
blastocyst
Cumulus cells
B
GSM910930
immature oocytes [VG23_13]
immature oocytes
Cumulus cells
VG
GSM910931
blastocyst [B41_14]
blastocyst
Cumulus cells
B
GSM910932
embryo of poor quality [E19_15]
embryo of poor quality
Cumulus cells
E
GSM910933
embryo of poor quality [E12_16]
embryo of poor quality
Cumulus cells
E
GSM910934
blastocyst [B13_17]
blastocyst
Cumulus cells
B
GSM910935
blastocyst [B31_18]
blastocyst
Cumulus cells
B
GSM910936
immature oocytes [VG28_19]
immature oocytes
Cumulus cells
VG
GSM910937
immature oocytes [VG28_20]
immature oocytes
Cumulus cells
VG
GSM910938
embryo of poor quality [E1_21]
embryo of poor quality
Cumulus cells
E
GSM910939
embryo of poor quality [E3_22]
embryo of poor quality
Cumulus cells
E
GSM910940
immature oocytes [VG1_23]
immature oocytes
Cumulus cells
VG
GSM910941
immature oocytes [VG2_24]
immature oocytes
Cumulus cells
VG
GSM910942
embryo of poor quality [E23_25]
embryo of poor quality
Cumulus cells
E
GSM910943
embryo of poor quality [E13_26]
embryo of poor quality
Cumulus cells
E
GSM910944
immature oocytes [VG15_27]
immature oocytes
Cumulus cells
VG
GSM910945
immature oocytes [VG12_28]
immature oocytes
Cumulus cells
VG
GSM910946
blastocyst [B23_29]
blastocyst
Cumulus cells
B
GSM910947
blastocyst [B39_30]
blastocyst
Cumulus cells
B
GSM910948
embryo of poor quality [E39_31]
embryo of poor quality
Cumulus cells
E
GSM910949
embryo of poor quality [E48_32]
embryo of poor quality
Cumulus cells
E
GSM910972
embryo of poor quality [E71]
embryo of poor quality
Cumulus cells
E
GSM910973
embryo of poor quality [E83]
embryo of poor quality
Cumulus cells
E
GSM910974
embryo of poor quality [E38a]
embryo of poor quality
Cumulus cells
E
GSM910975
blastocyst [B96]
blastocyst
Cumulus cells
B
GSM910976
embryo of poor quality [E39a]
embryo of poor quality
Cumulus cells
E
GSM910977
embryo of poor quality [E95]
embryo of poor quality
Cumulus cells
E
GSM910978
blastocyst [B13a]
blastocyst
Cumulus cells
B
GSM910979
embryo of poor quality [E70]
embryo of poor quality
Cumulus cells
E
GSM910980
blastocyst [B87]
blastocyst
Cumulus cells
B
GSM910981
blastocyst [B61]
blastocyst
Cumulus cells
B
GSM910982
embryo of poor quality [E38b]
embryo of poor quality
Cumulus cells
E
GSM910983
embryo of poor quality [E92]
embryo of poor quality
Cumulus cells
E
GSM910984
embryo of poor quality [E71-80]
embryo of poor quality
Cumulus cells
E
GSM910985
blastocyst [B96-65]
blastocyst
Cumulus cells
B
GSM910986
embryo of poor quality [E39b]
embryo of poor quality
Cumulus cells
E
GSM910987
embryo of poor quality [E95-65]
embryo of poor quality
Cumulus cells
E
GSM910988
blastocyst [B87-65]
blastocyst
Cumulus cells
B
GSM910989
blastocyst [B100]
blastocyst
Cumulus cells
B
GSM910990
embryo of poor quality [E71-50]
embryo of poor quality
Cumulus cells
E
GSM910991
blastocyst [B88]
blastocyst
Cumulus cells
B
GSM910992
blastocyst [B13b]
blastocyst
Cumulus cells
B
GSM910993
embryo of poor quality [E95-80]
embryo of poor quality
Cumulus cells
E
GSM910994
blastocyst [B87-80]
blastocyst
Cumulus cells
B
GSM910995
blastocyst [B96-80]
blastocyst
Cumulus cells
B
GSM910996
blastocyst [B100_40]
blastocyst
Cumulus cells
B
GSM910997
blastocyst [B101_39]
blastocyst
Cumulus cells
B
GSM910998
blastocyst [B40_27]
blastocyst
Cumulus cells
B
GSM910999
blastocyst [B47_22]
blastocyst
Cumulus cells
B
GSM911000
blastocyst [B50_12]
blastocyst
Cumulus cells
B
GSM911001
blastocyst [B53_28]
blastocyst
Cumulus cells
B
GSM911002
blastocyst [B60_2]
blastocyst
Cumulus cells
B
GSM911003
blastocyst [B61_6]
blastocyst
Cumulus cells
B
GSM911004
blastocyst [B63_5]
blastocyst
Cumulus cells
B
GSM911005
blastocyst [B64_1]
blastocyst
Cumulus cells
B
GSM911006
blastocyst [B67_21]
blastocyst
Cumulus cells
B
GSM911007
blastocyst [B76_31]
blastocyst
Cumulus cells
B
GSM911008
blastocyst [B79_17]
blastocyst
Cumulus cells
B
GSM911009
blastocyst [B83_32]
blastocyst
Cumulus cells
B
GSM911010
blastocyst [B87_35]
blastocyst
Cumulus cells
B
GSM911011
blastocyst [B88_36]
blastocyst
Cumulus cells
B
GSM911012
blastocyst [B93_11]
blastocyst
Cumulus cells
B
GSM911013
blastocyst [B99_18]
blastocyst
Cumulus cells
B
GSM911014
embryo of poor quality [E16_24]
embryo of poor quality
Cumulus cells
E
GSM911015
embryo of poor quality [E20_19]
embryo of poor quality
Cumulus cells
E
GSM911016
embryo of poor quality [E24_29]
embryo of poor quality
Cumulus cells
E
GSM911017
embryo of poor quality [E30_26]
embryo of poor quality
Cumulus cells
E
GSM911018
embryo of poor quality [E37_13]
embryo of poor quality
Cumulus cells
E
GSM911019
embryo of poor quality [E49_23]
embryo of poor quality
Cumulus cells
E
GSM911020
embryo of poor quality [E53_20]
embryo of poor quality
Cumulus cells
E
GSM911021
embryo of poor quality [E56_4]
embryo of poor quality
Cumulus cells
E
GSM911022
embryo of poor quality [E57_3]
embryo of poor quality
Cumulus cells
E
GSM911023
embryo of poor quality [E66_30]
embryo of poor quality
Cumulus cells
E
GSM911024
embryo of poor quality [E68_9]
embryo of poor quality
Cumulus cells
E
GSM911025
embryo of poor quality [E74_37]
embryo of poor quality
Cumulus cells
E
GSM911026
embryo of poor quality [E83_34]
embryo of poor quality
Cumulus cells
E
GSM911027
embryo of poor quality [E89_33]
embryo of poor quality
Cumulus cells
E
GSM911028
embryo of poor quality [E92_14]
embryo of poor quality
Cumulus cells
E
GSM911029
embryo of poor quality [E95_10]
embryo of poor quality
Cumulus cells
E
GSM911030
embryo of poor quality [E97_38]
embryo of poor quality
Cumulus cells
E
GSM911031
embryo of poor quality [E98_25]
embryo of poor quality
Cumulus cells
E

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