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In Progress
Clinical
GSE9526_family
Purpose

Besides the established selection criteria based on embryo morphology and blastomere number, new parameters for embryo viability are needed to improve the clinical outcome of in vitro fertilization (IVF) and more particular of elective single embryo transfer (eSET). The aim of the study was to analyse genome-wide whether the embryo viability was reflected by the expression of genes in the oocyte surrounding cumulus cells. Early cleavage (EC) was chosen as a parameter for embryo viability.Keywords: class comparison

Hypothesis

To check if cumulus cell genes affect embryo cleaving.

Experimental Design

Consenting patients visiting the IVF clinic underwent an IVF or ICSI treatment. Immediately following ultrasound-guided cumulus-oocyte-complex (COC) retrieval, a proportion of the cumulus cells surrounding the oocyte were removed. Gene expression in cumulus cells from eight oocytes resulting in an early cleavage embryo (EC-CC; n=8) and from eight oocytes resulting in a non-EC embryo (NEC-CC; n=8) derived from six patients were analysed using microarrays (n=16). To exclude a differential gene expression due to differences in patient characteristics, samples were paired. From four patients both an EC-CC and a NEC-CC sample were used. From two additional patients two EC-CC as well as two NEC-CC samples were used.

Experimental Variables

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Controls

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Methods

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Additional Information

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Microarray
Affymetrix HG-U133_Plus_2
16 Samples Loaded: 16
Human (Homo sapiens)
cumulus cells
Sample Set Spreadsheet
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Samples Preview
Sample ID !Sample Title group
GSM241222 cumulus cells-early cleavage-rep1a EC
GSM241223 cumulus cells-early cleavage-rep1b EC
GSM241224 cumulus cells-early cleavage-rep2 EC
GSM241225 cumulus cells-early cleavage-rep3 EC
GSM241226 cumulus cells-early cleavage-rep4 EC
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File
sampleset4000036_sampleannotations-modified.csv
Sample Set Spreadsheet
sampleset4000036_sampleannotations-modified.csv
Sample Set Spreadsheet
Raw Signal
Raw Signal
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Clinical Datasource
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Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID !Sample Title Group
GSM241222
cumulus cells-early cleavage-rep1a
EC
GSM241223
cumulus cells-early cleavage-rep1b
EC
GSM241224
cumulus cells-early cleavage-rep2
EC
GSM241225
cumulus cells-early cleavage-rep3
EC
GSM241226
cumulus cells-early cleavage-rep4
EC
GSM241227
cumulus cells-early cleavage-rep5
EC
GSM241228
cumulus cells-early cleavage-rep6a
EC
GSM241229
cumulus cells-early cleavage-rep6b
EC
GSM241230
cumulus cells-late cleavage-rep1a
LC
GSM241231
cumulus cells-late cleavage-rep1b
LC
GSM241232
cumulus cells-late cleavage-rep2
LC
GSM241233
cumulus cells-late cleavage-rep3
LC
GSM241234
cumulus cells-late cleavage-rep4
LC
GSM241235
cumulus cells-late cleavage-rep5
LC
GSM241236
cumulus cells-late cleavage-rep6a
LC
GSM241237
cumulus cells-late cleavage-rep6b
LC

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